You got to give us a photo, but I think I know what you mean,,,
No panic. Trichocereus are almost unkillable. I told you not to get a named or heavily cloned, as a seed raised plant might be blackrot free, clones are usually infected.
You can't get rid of this thing, learn to live with this. Cutting, stressing, lots of rain/humidity/watering can worsen it, but it always heals, it almost never kills a plant.